Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | Q | R | S | T | U | V | W A abs_scalar_diff() (graintrace.similarity_metric_library.SimilarityMetricLibrary method) abs_scalar_diff_batch() (in module graintrace.similarity_metric_library) abs_scalar_diff_distance() (in module graintrace.similarity_metric_library) absorb_fragments() (graintrace.fragmentation.FragmentationAnalyzer static method) activate_all_registered_features() (graintrace.tess_to_gnn.NeperTessToGraphNN method) add_block_rgb_to_exodus() (graintrace.ipf_postprocess.IPFProcessor method) add_block_rgb_to_vtk() (graintrace.ipf_postprocess.IPFProcessor method) add_element_field_to_exodus() (graintrace.ipf_postprocess.IPFProcessor method) add_element_rgb_to_exodus() (graintrace.ipf_postprocess.IPFProcessor method) adjacency_remerge() (graintrace.fragmentation.FragmentationAnalyzer static method) angle_convention (graintrace.similarity_metric_library.MisorientationDistEdges attribute) apply_rotation_to_properties() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) available_projections (graintrace.ipf_postprocess.IPFProcessor attribute) average_orientation() (in module graintrace.orientation_helper) average_rotations() (in module graintrace.nf.metrics) B BaseMaterialApproximationModel (class in graintrace.base_material_approximation) batched_norm() (in module graintrace.nf.metrics) build_cell_graph() (graintrace.tess_to_gnn.NeperTessToGraphNN method) build_env() (in module graintrace.neper_env) build_graph() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) build_voronoi() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) C calibrate() (graintrace.material_calibration.MaterialCalibration method) check_dependencies() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) (graintrace.generate_random_crystal.CrystalGenerator method) check_feature_matrix() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) (graintrace.graph_spatial_cluster.GraphSpatialCluster method) check_input() (graintrace.experiment_postprocessing.ExperimentResults method) (graintrace.simulation_postprocessing.SimulationResults method) ClusterAnalysisIndicator (class in graintrace.cluster_indicator) collect_experiment_files() (in module graintrace.experiment_rotation_helper) compose_tracks() (graintrace.ipf_orientation_tracking.OrientationTracker static method) compute_cell_geometry() (in module graintrace.hedm_stitching_techniques.scan_tessellation) compute_edge_distances() (graintrace.graph_spatial_cluster.GraphSpatialCluster method) compute_edge_weights() (graintrace.graph_spatial_cluster.GraphSpatialCluster method) compute_principal_axes() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) convert() (graintrace.nf_grid_conversion.NFGridConversion method) CPFESimulation (class in graintrace.run_cpfe_simulation) crop_tessellation() (graintrace.generate_random_crystal.CrystalGenerator static method) CrystalGenerator (class in graintrace.generate_random_crystal) D DEFAULT_EXCLUDE_PARAMETERS (graintrace.taylor.TaylorModel attribute) default_message_passing_function() (graintrace.grain_graph_matching.GraphGrainMatcher static method) default_neighbor_selection_cost_function() (graintrace.grain_graph_matching.GraphGrainMatcher static method) default_neper_env() (in module graintrace.hedm_stitching_techniques.scan_tessellation) DEFAULT_PARAM_RANGES (graintrace.material_calibration.MaterialCalibration attribute) DEFAULT_PARAMS (graintrace.run_cpfe_simulation.CPFESimulation attribute) DEFAULT_SCULPT_OPTIONS (graintrace.construct_nf_mesh.NearFieldMeshBuilder attribute) (graintrace.construct_voxel_mesh.VoxelMeshBuilder attribute) DEFAULT_SEGMENTATION (graintrace.construct_nf_mesh.NearFieldMeshBuilder attribute) (graintrace.construct_voxel_mesh.VoxelMeshBuilder attribute) detect_splits() (graintrace.fragmentation.FragmentationAnalyzer method) device (graintrace.similarity_metric_library.MisorientationDistEdges attribute) diff_norm_3x3() (in module graintrace.similarity_metric_library) diff_norm_3x3_batch() (in module graintrace.similarity_metric_library) dist_edges (graintrace.user_data_class.SimilarityMetric attribute) distances_to_weights() (graintrace.graph_spatial_cluster.GraphSpatialCluster static method) E eps (graintrace.user_data_class.WeightConfig attribute) estimate_sigma_from_distances() (graintrace.graph_spatial_cluster.GraphSpatialCluster static method) estimate_sigma_from_sampled_edges() (graintrace.graph_spatial_cluster.GraphSpatialCluster method) euler_to_matrix() (in module graintrace.orientation_helper) euler_to_mrp() (in module graintrace.orientation_helper) evaluate_output_voronoi() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) experiment_grain_tracks() (graintrace.ipf_orientation_tracking.OrientationTracker method) experiment_grain_tracks_by_id() (graintrace.ipf_orientation_tracking.OrientationTracker method) ExperimentResults (class in graintrace.experiment_postprocessing) export_cell_properties() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) F feature_cols (graintrace.user_data_class.SimilarityMetric attribute) FieldFileNaming (class in graintrace.experiment_postprocessing) (class in graintrace.simulation_postprocessing) find_neper() (in module graintrace.neper_env) fixed_grid_to_vtk() (in module graintrace.nf.convert) flood() (in module graintrace.nf.segment) fold_to_reference_variant() (in module graintrace.nf.metrics) format_report() (in module graintrace.doctor) forward() (graintrace.taylor.UniaxialTaylorModel method) FragmentationAnalyzer (class in graintrace.fragmentation) func (graintrace.user_data_class.SimilarityMetric attribute) G gamma_sweep_leiden() (graintrace.fragmentation.FragmentationAnalyzer static method) generate_ff() (graintrace.synthetic_hedm_generator.SyntheticHEDMGenerator method) generate_mesh() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) generate_nf() (graintrace.synthetic_hedm_generator.SyntheticHEDMGenerator method) generate_tessellation() (graintrace.generate_random_crystal.CrystalGenerator method) get_cluster_properties() (graintrace.graph_spatial_cluster.GraphSpatialCluster method) get_ipf_color() (graintrace.ipf_postprocess.IPFProcessor method) get_ipf_points() (graintrace.ipf_postprocess.IPFProcessor method) get_neighbor_indices() (in module graintrace.nf.image) get_params() (graintrace.taylor.TaylorModel method) get_reduced_ipf_directions() (graintrace.ipf_postprocess.IPFProcessor method) get_section() (graintrace.run_cpfe_simulation.CPFESimulation method) get_tensor_block() (graintrace.experiment_postprocessing.ExperimentResults method) (graintrace.simulation_postprocessing.SimulationResults method) get_tensor_element() (graintrace.experiment_postprocessing.ExperimentResults method) (graintrace.simulation_postprocessing.SimulationResults method) grain_fragments() (graintrace.fragmentation.FragmentationAnalyzer method) graintrace.base_material_approximation module graintrace.cluster_indicator module graintrace.construct_nf_mesh module graintrace.construct_voronoi_mesh module graintrace.construct_voxel_mesh module graintrace.doctor module graintrace.experiment_postprocessing module graintrace.experiment_rotation_helper module graintrace.fragmentation module graintrace.generate_random_crystal module graintrace.grain_graph_matching module graintrace.graph_spatial_cluster module graintrace.grid_resampling module graintrace.hedm_stitching_techniques module graintrace.hedm_stitching_techniques.region_base_stitching module graintrace.hedm_stitching_techniques.scan_tessellation module graintrace.ipf_orientation_tracking module graintrace.ipf_postprocess module graintrace.material_calibration module graintrace.neper_env module graintrace.nf module graintrace.nf.convert module graintrace.nf.image module graintrace.nf.mesh module graintrace.nf.metrics module graintrace.nf.segment module graintrace.nf.smooth module graintrace.nf_grid_conversion module graintrace.orientation_helper module graintrace.plot_postprocessing module graintrace.rare_cluster_indicator module graintrace.rare_criteria_selection_library module graintrace.rei_comparison module graintrace.run_cpfe_simulation module graintrace.scan_stitching_comparison module graintrace.similarity_metric_library module graintrace.simulation_postprocessing module graintrace.synthetic_hedm_generator module graintrace.taylor module graintrace.tess_to_gnn module graintrace.user_data_class module GraphGrainMatcher (class in graintrace.grain_graph_matching) GraphSpatialCluster (class in graintrace.graph_spatial_cluster) GridResampler (class in graintrace.grid_resampling) H hedm_zscan() (graintrace.generate_random_crystal.CrystalGenerator method) I IdentifyRareClusters (class in graintrace.rare_cluster_indicator) infill_nearest_neighbor() (in module graintrace.nf.segment) input_angle_type (graintrace.similarity_metric_library.MisorientationDistEdges attribute) install_neper() (graintrace.tess_to_gnn.NeperTessToGraphNN method) ipf_color_chart() (graintrace.ipf_postprocess.IPFProcessor method) IPFProcessor (class in graintrace.ipf_postprocess) IPFProcessor.IPFColorScheme (class in graintrace.ipf_postprocess) L layer_number() (in module graintrace.nf.convert) load() (graintrace.material_calibration.MaterialCalibration method) load_block_data() (graintrace.simulation_postprocessing.SimulationResults method) load_data() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) (graintrace.experiment_postprocessing.ExperimentResults method) (graintrace.graph_spatial_cluster.GraphSpatialCluster method) (graintrace.scan_stitching_comparison.ScanStitchingComparison method) load_experiment_data() (graintrace.base_material_approximation.BaseMaterialApproximationModel method) (graintrace.taylor.TaylorModel method) load_field_data() (graintrace.simulation_postprocessing.SimulationResults method) load_geometry_information() (graintrace.tess_to_gnn.NeperTessToGraphNN method) load_orientation_matrices() (in module graintrace.orientation_helper) load_orientations() (in module graintrace.orientation_helper) load_orientations_mrp() (in module graintrace.orientation_helper) load_strains() (in module graintrace.orientation_helper) load_weights() (in module graintrace.orientation_helper) M main() (in module graintrace.doctor) make_misorientation_dist_edges() (in module graintrace.similarity_metric_library) make_stage_objects() (graintrace.rare_cluster_indicator.IdentifyRareClusters method) map_orientations() (in module graintrace.nf.mesh) match_grains() (graintrace.grain_graph_matching.GraphGrainMatcher method) MaterialCalibration (class in graintrace.material_calibration) matrix_to_euler() (in module graintrace.orientation_helper) matrix_to_mrp() (in module graintrace.orientation_helper) matrix_to_quat() (in module graintrace.orientation_helper) max_rare (graintrace.user_data_class.RareCriteria attribute) mean_orientation_mrp() (graintrace.fragmentation.FragmentationAnalyzer static method) merge_fragments_by_misorientation() (graintrace.fragmentation.FragmentationAnalyzer static method) mesh() (graintrace.construct_nf_mesh.NearFieldMeshBuilder method) (graintrace.construct_voxel_mesh.VoxelMeshBuilder method) mesh_sculpt() (in module graintrace.nf.mesh) message_passing() (graintrace.grain_graph_matching.GraphGrainMatcher method) min_size (graintrace.user_data_class.RareCriteria attribute) misorientation() (graintrace.similarity_metric_library.SimilarityMetricLibrary method) (in module graintrace.nf.metrics) (in module graintrace.orientation_helper) misorientation_distance() (in module graintrace.similarity_metric_library) misorientation_matrix() (in module graintrace.orientation_helper) MisorientationDistEdges (class in graintrace.similarity_metric_library) mode (graintrace.user_data_class.WeightConfig attribute) module graintrace.base_material_approximation graintrace.cluster_indicator graintrace.construct_nf_mesh graintrace.construct_voronoi_mesh graintrace.construct_voxel_mesh graintrace.doctor graintrace.experiment_postprocessing graintrace.experiment_rotation_helper graintrace.fragmentation graintrace.generate_random_crystal graintrace.grain_graph_matching graintrace.graph_spatial_cluster graintrace.grid_resampling graintrace.hedm_stitching_techniques graintrace.hedm_stitching_techniques.region_base_stitching graintrace.hedm_stitching_techniques.scan_tessellation graintrace.ipf_orientation_tracking graintrace.ipf_postprocess graintrace.material_calibration graintrace.neper_env graintrace.nf graintrace.nf.convert graintrace.nf.image graintrace.nf.mesh graintrace.nf.metrics graintrace.nf.segment graintrace.nf.smooth graintrace.nf_grid_conversion graintrace.orientation_helper graintrace.plot_postprocessing graintrace.rare_cluster_indicator graintrace.rare_criteria_selection_library graintrace.rei_comparison graintrace.run_cpfe_simulation graintrace.scan_stitching_comparison graintrace.similarity_metric_library graintrace.simulation_postprocessing graintrace.synthetic_hedm_generator graintrace.taylor graintrace.tess_to_gnn graintrace.user_data_class move_to_fundamental_zone() (in module graintrace.orientation_helper) mrp_to_euler() (in module graintrace.orientation_helper) mrp_to_matrix() (in module graintrace.orientation_helper) N name (graintrace.user_data_class.SimilarityMetric attribute) NearFieldMeshBuilder (class in graintrace.construct_nf_mesh) neighbor_selection() (graintrace.grain_graph_matching.GraphGrainMatcher method) NeperTessToGraphNN (class in graintrace.tess_to_gnn) nf_to_pointcloud() (in module graintrace.nf.convert) NFGridConversion (class in graintrace.nf_grid_conversion) num_timesteps() (graintrace.grid_resampling.GridResampler method) nye_tensor_norm() (graintrace.similarity_metric_library.SimilarityMetricLibrary method) O objective() (graintrace.material_calibration.MaterialCalibration method) OrientationTracker (class in graintrace.ipf_orientation_tracking) output_unit (graintrace.similarity_metric_library.MisorientationDistEdges attribute) P parse_tess() (graintrace.tess_to_gnn.NeperTessToGraphNN method) perturb_orientation() (in module graintrace.orientation_helper) pick_gamma_by_percolation() (graintrace.fragmentation.FragmentationAnalyzer static method) plot_block_properties_distribution() (in module graintrace.plot_postprocessing) plot_block_properties_over_time() (in module graintrace.plot_postprocessing) plot_centroids() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) plot_dendrogram() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) plot_ipf_fragmentation_tracking() (in module graintrace.plot_postprocessing) plot_ipf_orientation_tracking() (in module graintrace.plot_postprocessing) plot_macroscopic_stress_strain() (in module graintrace.plot_postprocessing) plot_pole_figure() (in module graintrace.plot_postprocessing) plot_strain_histogram() (graintrace.material_calibration.MaterialCalibration method) plot_stress_strain() (graintrace.material_calibration.MaterialCalibration method) plot_texture() (graintrace.material_calibration.MaterialCalibration method) pointcloud_to_fixed_grid() (in module graintrace.nf.convert) power (graintrace.user_data_class.WeightConfig attribute) process_layer_pointcloud() (in module graintrace.nf.convert) prune_topk_per_node_parallel() (graintrace.graph_spatial_cluster.GraphSpatialCluster static method) Q quat_to_matrix() (in module graintrace.orientation_helper) R RareCriteria (class in graintrace.user_data_class) read_input() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) reconstruct() (graintrace.construct_nf_mesh.NearFieldMeshBuilder method) (graintrace.construct_voxel_mesh.VoxelMeshBuilder method) reformat_tesr_file() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) RegionBaseStitching (class in graintrace.hedm_stitching_techniques.region_base_stitching) register_dataframe_features() (graintrace.tess_to_gnn.NeperTessToGraphNN method) register_default_features() (graintrace.tess_to_gnn.NeperTessToGraphNN method) REIComparison (class in graintrace.rei_comparison) remove_outside_points() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) remove_small_segments() (in module graintrace.nf.segment) reorientation_from_reference() (graintrace.fragmentation.FragmentationAnalyzer method) report() (in module graintrace.doctor) REQUIRED_SCULPT_KEYS (graintrace.construct_nf_mesh.NearFieldMeshBuilder attribute) (graintrace.construct_voxel_mesh.VoxelMeshBuilder attribute) resample() (graintrace.grid_resampling.GridResampler method) rescale_exodus_mesh() (in module graintrace.nf.mesh) resolve_neper_env() (in module graintrace.neper_env) rotate() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) run() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) (graintrace.graph_spatial_cluster.GraphSpatialCluster method) (graintrace.hedm_stitching_techniques.region_base_stitching.RegionBaseStitching method) (graintrace.run_cpfe_simulation.CPFESimulation method) (graintrace.synthetic_hedm_generator.SyntheticHEDMGenerator method) run_clustering() (graintrace.rare_cluster_indicator.IdentifyRareClusters method) run_comparison() (graintrace.rei_comparison.REIComparison method) (graintrace.scan_stitching_comparison.ScanStitchingComparison method) run_get_rare_cluster() (graintrace.rare_cluster_indicator.IdentifyRareClusters method) run_neper_for_geometry_information() (graintrace.tess_to_gnn.NeperTessToGraphNN method) run_scipy_hierarchical() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) run_sklearn_agglomerative() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) run_sklearn_dbscan() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) run_sklearn_optics() (graintrace.cluster_indicator.ClusterAnalysisIndicator method) S save() (graintrace.material_calibration.MaterialCalibration method) ScanStitchingComparison (class in graintrace.scan_stitching_comparison) seg_to_grain_table() (graintrace.fragmentation.FragmentationAnalyzer method) segment() (graintrace.fragmentation.FragmentationAnalyzer method) segment_graph_networkit() (graintrace.graph_spatial_cluster.GraphSpatialCluster method) select_highest_norm_3x3_tensor() (in module graintrace.rare_criteria_selection_library) select_highest_scalar() (in module graintrace.rare_criteria_selection_library) select_highest_von_mises_from_components() (in module graintrace.rare_criteria_selection_library) select_smallest_cluster() (in module graintrace.rare_criteria_selection_library) selector (graintrace.user_data_class.RareCriteria attribute) set_parameters() (graintrace.run_cpfe_simulation.CPFESimulation method) set_params() (graintrace.taylor.TaylorModel method) show_morpho_options() (graintrace.generate_random_crystal.CrystalGenerator static method) sigma (graintrace.user_data_class.WeightConfig attribute) sigma_auto (graintrace.user_data_class.WeightConfig attribute) SimilarityMetric (class in graintrace.user_data_class) SimilarityMetricLibrary (class in graintrace.similarity_metric_library) simulate() (graintrace.base_material_approximation.BaseMaterialApproximationModel method) (graintrace.taylor.TaylorModel method) simulation_element_tracks() (graintrace.ipf_orientation_tracking.OrientationTracker method) simulation_grain_tracks() (graintrace.ipf_orientation_tracking.OrientationTracker method) SimulationResults (class in graintrace.simulation_postprocessing) size_quantile (graintrace.user_data_class.RareCriteria attribute) smooth() (in module graintrace.nf.smooth) SOLVER_ROUTE_DECKS (graintrace.run_cpfe_simulation.CPFESimulation attribute) symmetry (graintrace.similarity_metric_library.MisorientationDistEdges attribute) symmetry_operators() (in module graintrace.orientation_helper) SyntheticHEDMGenerator (class in graintrace.synthetic_hedm_generator) T TaylorModel (class in graintrace.taylor) try_parse_float() (in module graintrace.experiment_rotation_helper) U UniaxialTaylorModel (class in graintrace.taylor) update_experiments() (in module graintrace.experiment_rotation_helper) V validate_bounding_box() (graintrace.construct_voronoi_mesh.VoronoiMeshBuilder method) validate_distribution() (graintrace.generate_random_crystal.CrystalGenerator static method) validate_geometry_and_bcs() (graintrace.run_cpfe_simulation.CPFESimulation method) validate_morpho() (graintrace.generate_random_crystal.CrystalGenerator static method) validate_topology() (graintrace.tess_to_gnn.NeperTessToGraphNN method) visualize_graph_2D() (graintrace.tess_to_gnn.NeperTessToGraphNN method) visualize_graph_3D() (graintrace.tess_to_gnn.NeperTessToGraphNN method) von_mises_stress() (graintrace.similarity_metric_library.SimilarityMetricLibrary method) von_mises_stress_distance() (in module graintrace.similarity_metric_library) von_mises_stress_distance_batch() (in module graintrace.similarity_metric_library) VoronoiMeshBuilder (class in graintrace.construct_voronoi_mesh) VoxelMeshBuilder (class in graintrace.construct_voxel_mesh) W WeightConfig (class in graintrace.user_data_class) write_bc_file() (graintrace.run_cpfe_simulation.CPFESimulation method) write_orientation_file() (graintrace.run_cpfe_simulation.CPFESimulation method) write_postprocess_file() (graintrace.run_cpfe_simulation.CPFESimulation method) write_reorientation_field() (graintrace.fragmentation.FragmentationAnalyzer method) write_results() (graintrace.grain_graph_matching.GraphGrainMatcher method) write_spn() (in module graintrace.nf.mesh) write_to_csv() (graintrace.generate_random_crystal.CrystalGenerator static method) write_voxel_exodus() (in module graintrace.nf.mesh)